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Computing platforms¶

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In order to conduct scientific programmingit is required that you have an access to a Linux/Unix computing platform, where you canexcersise such series of programming studies.

Basically, there are several options to bring a Linux/Unix computingsystem to your daily scientific adventures.Please see also Installing Linux on Your PC.

  • if your machine is either a Linux or Mac machine, use your own machine to run your code locally.
  • if your machine is a Windows PC, you can remotely access to a Linuxcomputer using an X-forwarding terminal such asPuTTy over the network.Putty is one of the SSH clients on Windows allowing you to work on a remote Linux computers.
  • if you prefer to run programming locally rather remotely (e.g., limited internet access at your place), you can either installCygwin which brings you functionalitysimilar to a Linux distribution on Windows.Note that Cygwin is not a way to run native Linux apps on Windows.
  • if you rather wish to have a native Linux setup on your Windows PC, you can run a pure linux environmentusing a free virtualization software calledvirtualbox which is quite excellent.This also allows file sharing between your host operating system (e.g., Windows) and the virtual operating system (e.g., Linux).

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RemarkYou can also learn useful tips not only from google searches but also from youtube these days.So please use those visual resources as well as reading resources.

RemarkAnd, don’t forget one thing. If you need help, please don’t be shy hesitating to ask around good people.And I am one of them, hopefully.

Computing Resources in AMS¶

Even though you might have your own computing resources over the course (your own Linux or Mac),we choose the default computing platform to be the Linux Grape cluster from the AMS department.You can see the description of Grape.

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If you are not an SOE student, please come to see the instructor to get an account on Grape.Basic Fortran and C/C++ compilers (e.g., GNU gfortran), someother necessary libraries, and softwares (gnuplot, matlab, idl, etc)are available on Grape. If you find any specific software needs to beinstalled, please let the instructor know your request.

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Since it uses a Linux operating system (Grape runs on a Linux operating system called Rocks),and it is a remote cluster, in order to remotely access to Grape, you will need to

  • learn how to use Unix/Linux command lines (or simply commands) (see Basic Unix/Linux Commands)
  • make sure you have remote access to it and to its text editors(emacs, xemacs, vi, vim, etc.).

As mentioned, this should be trivial if you are using either a Linux or Mac machines.If you are a Windows PC user, you can install PuTTy (enough for accessing Grape remotely)or Cygwin (allowing remote access capability as well as Linux functionality).

If you haven’t had any chance to work on Linux/Unix type operating systems,please make sure you first familiarize yourself with basic Linux/Unixcommands (This is very crucial. See Basic Unix/Linux Commands).It is your prime responsibility to learn about working on Linux/Unix environment as quickly as possible– you should trust that you can do it!

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The instructor is happy to help you, however, is bound to be limited to provide you with detailedtechnical supports at all levels.

RemarkIf you prefer to use your own laptop/desktop to program, it is your responsibilityto install Fortran and all the libraries we will be using.You should be able to find a free Fortran 90 compiler (e.g., GNU gfortran) for most platforms.The most basic one will be sufficient for this class, but please be aware that the quality of a compilerhas a lot to do with the speed of execution of the program.

RemarkIn order to obtain an account on the Grape Linux cluster machine inAMS, please go visit the link and request an account for youself forthe course:

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  • <https://accounts.soe.ucsc.edu/accounts/register>

You need to specify me as your sponsoring faculty member.